Light and tender, these gluten free double chocolate carrot zucchini muffins are moist, fluffy and really chocolatey. Perfect for breakfast or a healthy snack, and a delicious way to sneak in some vegetables.

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why you'll love these chocolate muffins
- Energizing - these double chocolate muffins are made with wholesome ingredients like almond flour, fresh zucchini and carrot, and pure maple syrup. They're gluten-free, dairy-free, have no butter, no oil, no all purpose flour and refined sugar-free.
- Versatile - an easy grab-and-go healthy snack for breakfast, an afternoon treat or lunch boxes.
- Quick and easy - zucchini and carrot take no time to grate. Whisk the eggs and wet ingredients then add the dry ingredients, give it a quick mix, spoon into muffin cups and bake. This healthy chocolate zucchini muffins recipe couldn't be easier to whip up on a busy morning. No food processor or separate bowl needed.
- Moist and fluffy - the zucchini carrot muffins are moist, rich and tender. To make them more fluffy, whisk your eggs longer to add a little extra rise. Also, sifting your almond flour, cacao powder, baking soda and sea salt will add more air into the dry ingredients, helping to expand the size of the muffins. Careful not to over mix the batter! No need for almond butter, almond milk or coconut milk to moisten these tender double chocolate zucchini muffins.
If you love healthy baking you need to try my Oatmeal Strawberry Crumble Bars (gf, nut free), Best Healthy Low Sugar Carrot Cake and my Best Paleo Banana Bread with Coconut Flour. If you need some healthy breakfast ideas, try my Lemon Poppy Seed Scones (no egg, gf), Apple Buckwheat Pancakes with Diced Maple Apples (yum!), and my Carrot Cake Oatmeal Nut Breakfast Bars.
key ingredients and substitutions
- Almond flour - adds moisture and protein to the chocolate zucchini muffins. Almond meal would be too coarse for these gluten-free muffins.
- Cacao powder - adds deep chocolatey flavor to the double chocolate muffins. You can substitute with unsweetened cocoa powder if that's what you have in your pantry. Either are a great way to satisfy your chocolate craving!
- Eggs - add structure and moisture. Use at room temperature if swapping melted coconut oil for the apple sauce. I have not tried this recipe with flax egg.
- Apple sauce - replaces the need for oil in the recipe. You can substitute with the same amount of melted coconut oil if you prefer. Or, try simple swaps of ripe banana, pumpkin purée if you're a fan of pumpkin, or mashed baked sweet potato to get that extra moisture.
- Pure maple syrup - adds natural sweetness without the need for artificial sweeteners or brown sugar to hit that sweet spot. Swap for honey if you prefer a little extra sweetness in this healthy muffin recipe.
- Zucchini - there is lots of zucchini but it's fairly mild in flavor and provides texture and moisture. No need to peel the summer zucchini, just shred on a box grater.
- Carrots - add texture and moisture to the chocolate zucchini carrot muffins. For best results, I usually peel the carrots before shredding on a box grater.
- Dark chocolate chips - adds more rich chocolate flavor with little chocolate morsels in every bite of these chocolate chip zucchini muffins! I use dairy free and gluten free chocolate chips from Enjoy Life, like in my Chewy Chocolate Chip Granola Bars.
See recipe card for all ingredients and quantities.
Note: if the shredded zucchini is really moist, squeeze it into a paper towel to remove any excess moisture or excess water.
How to Make Double Chocolate Zucchini Carrot Muffins
- Preheat oven to 350°F. Line a 12-cup muffin tin with paper liners or grease with coconut oil.
- Add eggs, apple sauce, pure maple syrup and vanilla to a large bowl.
- Whisk until slightly frothy, 1-2 minutes.
- Add almond flour, cacao powder, baking soda and sea salt.
- Add zucchini, carrot and chocolate chips.
- Divide batter into prepared muffin tin. Bake for 18-20 minutes.
- Gently stir to combine. Careful not to over mix.
- Fold together, careful not to over mix.
- Cool completely on cooling rack.
Hint: if your almond flour and cacao powder are lumpy, pass through a sieve to break up the lumps and fluff the dry ingredients. This will add more aeration to the batter and the inside of your muffins will be fluffier.
Expert tips and variations
Smoother texture - if your almond flour and cacao powder are lumpy, sift before adding to the wet ingredients to avoid powdered lumps in the batter.
More chocolate - use extra chocolate chips to decorate the tops of the muffins before placing in the oven. This is my favorite way and a great addition for good reason, just like on my Soft Gluten-Free Pumpkin Cookies With Chocolate Chips.
Mini muffins - use a mini muffin tin with small muffin liners for mini gluten-free chocolate zucchini muffins. Check for doneness at 10-12 minutes. A toothpick inserted in the center of a muffin should come out clean or with little crumb.
Store - store in an airtight container on the counter for 2 days or in the fridge for up to a week. The muffins can also be stored in the freezer in a freezer-safe bag or container for up to 3 months. Wrap them individually to make a great grab-and-go snack.
Common Questions
No need to peel the zucchini before grating. If the carrot is fairly fresh, just give it a good scrub and grate zucchini and carrots. Otherwise, peel the carrot first before shredding.
The easiest way to shred zucchini or shred carrots is on the course side of a box grater. It's also quick and easy clean up. You can also use a food processor but your may end up with a few roughly chopped chunks in the mix.
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Recipe
Double Chocolate Carrot Zucchini Muffins
Equipment
- 1 12-cup muffin tin
- 1 large bowl or medium bowl, whisk, box grater
Ingredients
- 3 eggs
- ¼ cup unsweetened apple sauce, or coconut oil (melted), (64 grams)
- ⅓ cup pure maple syrup, (104 grams)
- 1 teaspoon pure vanilla extract
- 2 cups almond flour, (192 grams)
- ⅓ cup cacao powder, (28 grams)
- ½ teaspoon baking soda
- ¼ teaspoon fine sea salt
- ¾ cup shredded zucchini, (120 grams)
- ½ cup shredded carrot, (60 grams)
- ½ cup dark chocolate chips (dairy free), (85 grams)
Instructions
- Preheat oven to 350°F. Line a 12-cup muffin tin with paper liners or grease with coconut oil.
- In a large bowl whisk together eggs, apple sauce, maple syrup and vanilla until slightly frothy, 1-2 minutes.
- Add almond flour, cacao powder, baking soda and sea salt. Stir until combined. Fold in zucchini, carrot and chocolate chips.
- Divide into 12 muffin cups. Bake for 18-20 minutes, or until a toothpick inserted in center of a muffin comes out clean.
- Cool completely on wire rack.
Chloe B
I love these muffins! Made them for friends and they got gobbled up! No one knew they were gluten free and loved them. Super fluffy. Thanks for such a great recipe and please make more muffins!